Index

Symbols

--dataset sleepless-analyze command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-visualize command line option --detailed sleepless-analyze command line option sleepless-experiment command line option --dump-config sleepless-analyze command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-train-analysis command line option sleepless-visualize command line option --limit sleepless-dataset-check command line option --model sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option --model-parameters sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option --output-folder sleepless-analyze command line option sleepless-compare command line option sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option sleepless-train-analysis command line option --prediction-folder sleepless-analyze command line option sleepless-visualize command line option --sample sleepless-visualize command line option --subset sleepless-visualize command line option --type sleepless-visualize command line option --verbose sleepless-analyze command line option sleepless-compare command line option sleepless-dataset-check command line option sleepless-dataset-list command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-train-analysis command line option sleepless-visualize command line option

--weight sleepless-predict command line option -d sleepless-analyze command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-visualize command line option -H sleepless-analyze command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-train-analysis command line option sleepless-visualize command line option -l sleepless-dataset-check command line option -m sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option -mp sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option -n sleepless-visualize command line option -o sleepless-analyze command line option sleepless-compare command line option sleepless-experiment command line option sleepless-predict command line option sleepless-train command line option sleepless-train-analysis command line option -p sleepless-analyze command line option sleepless-visualize command line option -s sleepless-visualize command line option -t sleepless-visualize command line option -v sleepless-analyze command line option sleepless-compare command line option sleepless-dataset-check command line option sleepless-dataset-list command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-train-analysis command line option sleepless-visualize command line option -w sleepless-predict command line option

C

chan_list_to_dict() (in module sleepless.data.utils) check() (sleepless.data.dataset.CSVDataset method) (sleepless.data.dataset.JSONDataset method) check_exist_logfile() (in module sleepless.engine.trainer_torch) check_gpu() (in module sleepless.engine.trainer_torch) Checkpointer (class in sleepless.utils.checkpointer) checkpointer_process() (in module sleepless.engine.trainer_torch) ComposeTransform (class in sleepless.data.utils) compute_misclassification() (in module sleepless.utils.misclassification) CONFIG sleepless-analyze command line option sleepless-experiment command line option sleepless-predict command line option sleepless-preprocess command line option sleepless-train command line option sleepless-train-analysis command line option sleepless-visualize command line option

CONSTANTS sleepless-train-analysis command line option cpu_constants() (in module sleepless.utils.resources) CPULogger (class in sleepless.utils.resources) create_df() (in module sleepless.utils.utils_fig_table_df) create_logfile_fields() (in module sleepless.engine.trainer_torch) CSVDataset (class in sleepless.data.dataset)

D

data (sleepless.data.sample.DelayedSample property) DATASET sleepless-dataset-check command line option

dataset (in module sleepless.data.EDF) (in module sleepless.data.MASS) DelayedSample (class in sleepless.data.sample)

E

EEGPowerBand (class in sleepless.data.transforms)

F

FeatureExtractorChambon (class in sleepless.data.transforms)

forward() (sleepless.models.chambon2018.SleepStagerChambon2018 method) (sleepless.models.ninel_1d_cnn_ssc.NineL_1DCNN_SSC method)

G

GB (in module sleepless.utils.resources) get_samples_weights() (in module sleepless.data.utils)

get_sleep_stage_labels() (in module sleepless.utils.matplotlib_utils) gpu_constants() (in module sleepless.utils.resources) gpu_log() (in module sleepless.utils.resources)

H

has_checkpoint() (sleepless.utils.checkpointer.Checkpointer method)

J

JSONDataset (class in sleepless.data.dataset)

L

LABEL_PATH sleepless-compare command line option last_checkpoint() (sleepless.utils.checkpointer.Checkpointer method) ListSampleDataset (class in sleepless.data.utils) load() (sleepless.utils.checkpointer.Checkpointer method) load_annotation_raw() (in module sleepless.data.loader) load_edf_raw() (in module sleepless.data.loader)

load_rc() (in module sleepless.utils.rc) Loader (class in sleepless.data.loader) LoaderEdf (class in sleepless.data.EDF) LoaderMass (class in sleepless.data.MASS) LOG sleepless-train-analysis command line option log() (sleepless.utils.resources.CPULogger method) loss_graph_xgboost() (in module sleepless.utils.matplotlib_utils)

M

make_dataset() (in module sleepless.configs.datasets) make_delayed() (in module sleepless.data.loader) make_rst_tabulate() (in module sleepless.utils.utils_fig_table_df) make_stats() (in module sleepless.utils.stats_protocol) metric_stats() (in module sleepless.engine.analyze) metrics_computation() (in module sleepless.engine.analyze) misclassified_analyze() (in module sleepless.engine.analyze) module sleepless.configs.datasets sleepless.configs.datasets.EDF.sc_filtered sleepless.configs.datasets.EDF.sc_filtered_crop_wake sleepless.configs.datasets.EDF.sc_unfiltered sleepless.configs.datasets.EDF.st_filtered sleepless.configs.datasets.EDF.st_unfiltered sleepless.configs.datasets.EDF.train_sc_filtered sleepless.configs.datasets.EDF.train_st_filtered sleepless.configs.datasets.EDF.train_st_sc_filtered sleepless.configs.datasets.EDF_X_MASS.train_edf_sc sleepless.configs.datasets.EDF_X_MASS.train_edf_sc_crop_wake sleepless.configs.datasets.EDF_X_MASS.train_edf_st sleepless.configs.datasets.EDF_X_MASS.train_edf_st_sc sleepless.configs.datasets.EDF_X_MASS.train_mass_ss3 sleepless.configs.datasets.MASS.ss3_filtered_fpz_cz sleepless.configs.datasets.MASS.ss3_unfiltered_fpz_cz sleepless.configs.datasets.mixed_all_db.mixed_all_db sleepless.configs.models_and_models_parameters.blanco_baseline.blanco sleepless.configs.models_and_models_parameters.chambon2018_baseline.chambon2018 sleepless.configs.models_and_models_parameters.chambon2018_baseline.chambon2018_noscheduler sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_emg sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_eog sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_eog_emg sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_emg sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_eog sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_fpzcz sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_pzoz sleepless.configs.models_and_models_parameters.chambon2018_baseline.xgboost_chambon sleepless.configs.models_and_models_parameters.chambon2018_modified.chambon_gru.chambon_gru sleepless.configs.models_and_models_parameters.chambon2018_modified.chambon_lstm.chambon_lstm sleepless.configs.models_and_models_parameters.lstm_baseline.lstm sleepless.configs.models_and_models_parameters.mne_baseline.gbc sleepless.configs.models_and_models_parameters.mne_baseline.randomforest sleepless.configs.models_and_models_parameters.mne_baseline.xgboost sleepless.configs.models_and_models_parameters.nine_layers_cnn_baseline.ninel_1d_cnn_ssc sleepless.data.dataset sleepless.data.EDF sleepless.data.loader sleepless.data.MASS sleepless.data.sample sleepless.data.transforms sleepless.data.utils sleepless.engine.analyze sleepless.engine.predictor_scikit sleepless.engine.predictor_torch sleepless.engine.trainer_scikit sleepless.engine.trainer_torch sleepless.models.chambon2018 sleepless.models.ninel_1d_cnn_ssc sleepless.utils.checkpointer sleepless.utils.matplotlib_utils sleepless.utils.misclassification sleepless.utils.rc sleepless.utils.resources sleepless.utils.stats_protocol sleepless.utils.summary sleepless.utils.utils_fig_table_df

monitored_keys() (sleepless.utils.resources.ResourceMonitor static method)

N

NineL_1DCNN_SSC (class in sleepless.models.ninel_1d_cnn_ssc)

O

on_pick() (sleepless.utils.matplotlib_utils.PointBrowser method)

on_press() (sleepless.utils.matplotlib_utils.PointBrowser method)

P

plot_misclassified_epochs() (in module sleepless.utils.misclassification) plot_PSG_and_annotation() (in module sleepless.data.utils)

PointBrowser (class in sleepless.utils.matplotlib_utils) predict_scikit() (in module sleepless.engine.predictor_scikit) predict_torch() (in module sleepless.engine.predictor_torch)

R

RawToEpochs (class in sleepless.data.transforms) ResampleEpochs (class in sleepless.data.transforms) ResourceMonitor (class in sleepless.utils.resources)

run() (in module sleepless.engine.predictor_torch) (in module sleepless.engine.trainer_torch) run_nvidia_smi() (in module sleepless.utils.resources)

S

Sample (class in sleepless.data.sample) samples() (sleepless.data.dataset.CSVDataset method) save() (sleepless.utils.checkpointer.Checkpointer method) save_fig() (in module sleepless.utils.utils_fig_table_df) save_model_summary() (in module sleepless.engine.trainer_torch) save_tables() (in module sleepless.utils.utils_fig_table_df) saving_preprocess() (in module sleepless.data.utils) sleepless-analyze command line option --dataset --detailed --dump-config --output-folder --prediction-folder --verbose -d -H -o -p -v CONFIG sleepless-compare command line option --output-folder --verbose -o -v LABEL_PATH sleepless-dataset-check command line option --limit --verbose -l -v DATASET sleepless-dataset-list command line option --verbose -v sleepless-experiment command line option --dataset --detailed --dump-config --model --model-parameters --output-folder --verbose -d -H -m -mp -o -v CONFIG sleepless-predict command line option --dataset --dump-config --model --model-parameters --output-folder --verbose --weight -d -H -m -mp -o -v -w CONFIG sleepless-preprocess command line option --dataset --dump-config --verbose -d -H -v CONFIG sleepless-train command line option --dataset --dump-config --model --model-parameters --output-folder --verbose -d -H -m -mp -o -v CONFIG sleepless-train-analysis command line option --dump-config --output-folder --verbose -H -o -v CONFIG CONSTANTS LOG sleepless-visualize command line option --dataset --dump-config --prediction-folder --sample --subset --type --verbose -d -H -n -p -s -t -v CONFIG sleepless.configs.datasets module sleepless.configs.datasets.EDF.sc_filtered module

sleepless.configs.datasets.EDF.sc_filtered_crop_wake module sleepless.configs.datasets.EDF.sc_unfiltered module sleepless.configs.datasets.EDF.st_filtered module sleepless.configs.datasets.EDF.st_unfiltered module sleepless.configs.datasets.EDF.train_sc_filtered module sleepless.configs.datasets.EDF.train_st_filtered module sleepless.configs.datasets.EDF.train_st_sc_filtered module sleepless.configs.datasets.EDF_X_MASS.train_edf_sc module sleepless.configs.datasets.EDF_X_MASS.train_edf_sc_crop_wake module sleepless.configs.datasets.EDF_X_MASS.train_edf_st module sleepless.configs.datasets.EDF_X_MASS.train_edf_st_sc module sleepless.configs.datasets.EDF_X_MASS.train_mass_ss3 module sleepless.configs.datasets.MASS.ss3_filtered_fpz_cz module sleepless.configs.datasets.MASS.ss3_unfiltered_fpz_cz module sleepless.configs.datasets.mixed_all_db.mixed_all_db module sleepless.configs.models_and_models_parameters.blanco_baseline.blanco module sleepless.configs.models_and_models_parameters.chambon2018_baseline.chambon2018 module sleepless.configs.models_and_models_parameters.chambon2018_baseline.chambon2018_noscheduler module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_emg module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_eog module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_2eeg_eog_emg module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_emg module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_eog module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_fpzcz module sleepless.configs.models_and_models_parameters.chambon2018_baseline.randomforest_pzoz module sleepless.configs.models_and_models_parameters.chambon2018_baseline.xgboost_chambon module sleepless.configs.models_and_models_parameters.chambon2018_modified.chambon_gru.chambon_gru module sleepless.configs.models_and_models_parameters.chambon2018_modified.chambon_lstm.chambon_lstm module sleepless.configs.models_and_models_parameters.lstm_baseline.lstm module sleepless.configs.models_and_models_parameters.mne_baseline.gbc module sleepless.configs.models_and_models_parameters.mne_baseline.randomforest module sleepless.configs.models_and_models_parameters.mne_baseline.xgboost module sleepless.configs.models_and_models_parameters.nine_layers_cnn_baseline.ninel_1d_cnn_ssc module sleepless.data.dataset module sleepless.data.EDF module sleepless.data.loader module sleepless.data.MASS module sleepless.data.sample module sleepless.data.transforms module sleepless.data.utils module sleepless.engine.analyze module sleepless.engine.predictor_scikit module sleepless.engine.predictor_torch module sleepless.engine.trainer_scikit module sleepless.engine.trainer_torch module sleepless.models.chambon2018 module sleepless.models.ninel_1d_cnn_ssc module sleepless.utils.checkpointer module sleepless.utils.matplotlib_utils module sleepless.utils.misclassification module sleepless.utils.rc module sleepless.utils.resources module sleepless.utils.stats_protocol module sleepless.utils.summary module sleepless.utils.utils_fig_table_df module SleepStagerChambon2018 (class in sleepless.models.chambon2018) static_information_to_csv() (in module sleepless.engine.trainer_torch) subsets() (sleepless.data.dataset.CSVDataset method) (sleepless.data.dataset.JSONDataset method) summary() (in module sleepless.utils.summary)

T

torch_evaluation() (in module sleepless.engine.trainer_torch) ToTorchDataset (class in sleepless.data.transforms) train_epoch() (in module sleepless.engine.trainer_torch)

train_scikit() (in module sleepless.engine.trainer_scikit) train_scikit_grid_search() (in module sleepless.engine.trainer_scikit) train_torch() (in module sleepless.engine.trainer_torch) transform() (sleepless.data.transforms.RawToEpochs method)

U

update() (sleepless.utils.matplotlib_utils.PointBrowser method)

V

validate_epoch() (in module sleepless.engine.trainer_torch)

W

write_log_info() (in module sleepless.engine.trainer_torch)